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Publications
ACLAME: a CLAssification of Mobile genetic Elements, update 2010
Raphael Leplae, Gipsi Lima-Mendez, Ariane Toussaint
Nucleic Acids Res, 2010
Access: the abstract and the full article as PDF document.

If you publish data obtained, in 2010 and afterward, from the ACLAME web site or analysis results relying on the ACLAME database content, please cite this article.

Prophinder: a computational tool for prophage prediction in pro-karyotic genomes
Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint, Raphael Leplae
Bioinformatics, 2008
Access: the abstract and the advance access manuscript as PDF document.

If you publish predictions made with Prophinder, please cite this article.

Reticulate representation of evolutionary and functional relationships between phage genomes
Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint and Raphael Leplae
Mol Biol Evol, 2008
Access: the abstract and the advance access manuscript as PDF document.
PhiGO, a phage ontology associated with the ACLAME database
Ariane Toussaint, Gipsi Lima-Mendez and Raphael Leplae
Res Microbiol, 2007, Vol 158, Issue 7, 567-71
Access: the abstract and the full article as PDF document.

If you use the PhiGO, please cite this article.

Analysis of the phage sequence space: the benefit of structured information
Gipsi Lima-Mendez, Ariane Toussaint and Raphael Leplae
Virology, 2007, Vol. 365, Issue 2, 241-9
Access: the abstract and the full article as PDF document.
A first global analysis of plasmid encoded proteins in the ACLAME database
Raphael Leplae, Gipsi Lima-Mendez and Ariane Toussaint
FEMS Microbiol Rev., 2006, Vol. 30, Issue 6, 980-94
Access: the abstract and the full article as PDF document.
ACLAME: A CLAssification of Mobile genetic Elements
Raphael Leplae, Aline Hebrant, Shoshana J. Wodak and Ariane Toussaint
Nucleic Acids Research, 2004, Vol. 32, Database issue D45-D49
Access: the abstract and the full article as PDF document.

If you publish data obtained, before 2010, from the ACLAME web site or analysis results relying on the ACLAME database content, please cite this article.