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Prophinder: Prophage view description
Help navigation Prophinder home Genome view description Prophage view description Prophage ACLAME hits Genomic region view File formats

Summary

This view displays a summary about the prophage prediction and its bacterial genome:

Prophage information Prophage ID Genome info Number of CDS ACLAME hits Number of DRs Window size Iteration number Info link Prophage size Genome size Genome view link

Graphical representation

This section displays a detailed graphical representation of the predicted prophage. The first area is the full genome sequence representation with the prophage localised in it. The second area gives a full representation of the prophage region with its absolute coordinates in the host genome:

Prophage information GenBank accession number Window size Prophage location Genome representation Prophage ID CDS Prophage genomic region

Control panel

The control panel allows to modify the graphical representation or gives access to other type of information:

Control panel Image width Zoom ACLAME hits DRs link Redraw Show CDS Navigation

Prophage details

The list of CDS, and some other relevant features, within the predicted prophage is provided in this area:

Control panel Feature type column GIs column Coordinates column ACLAME hits column ACLAME functions column

Help navigation Prophinder home Genome view description Prophage view description Prophage ACLAME hits Genomic region view File formats