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All the exported data will be formatted as tab-delimited files unless an option is provided for a different format. Whenever there are multiple values in a given column, they will be separated by a semi-colon (';' character).
If the exported data have been used for research work, please cite the ACLAME paper from 2004 NAR DB issue in your publications (see the publications page). Thank you in advance, the ACLAME Team.

You are working with ACLAME version 0.4 in category All
You can change the dataset as follow:
Version
Categories
Categories Plasmids Viruses Prophages All Viruses and prophages

Download tools:
Download ACLAME families
Select the fields to include in the export:
Family ID
ACLAME function assignment
Sub-fields (format = <Fct id>|<Fct name>|<Fct description>):
     Function name
     Function description
Number of proteins
Specific tables
Table with ACLAME family IDs and non-redundant MGE IDs (from the proteins in each family)
Include MGE name Host ID Host name
Format options
Gzipped data
Simple text
MS Excel file

Download MGEs
Select the fields to include in the export:
MGE ACLAME ID
MGE name
MGE genome size (in bp)
Number of genes
Number of CDS
MGE NCBI Taxo ID
MGE Type (virus, plasmid, ...)
MGE genome type (DNA or RNA)
MGE genome strands (ds or ss)
MGE genome organisation (circular or linear)
MGE genome sequencing status (complete or partial)
MGE host name(s)
MGE host NCBI Taxo ID(s)
MGE cross-references (format = <db name>:[<id source>:]<id>)
Format options
Gzipped data
Simple text
MS Excel file

Download proteins
Select the fields to include in the export:
Sequence length
Original NCBI annotation
ACLAME family assignment and for all categories where the proteins belong to
Cross-references (format = <db name>:[<id source>:]<id>)
MGE ACLAME ID
MGE Name
ACLAME functional annotation(s)
Sequences (included by default if FASTA format selected, not included by default if Excel format selected)
Format options
Export in FASTA format
Gzipped data
Simple text
MS Excel file (valid only if FASTA format not selected)

Download genes
Select the fields to include in the export:
Sequence length
Gene name and locus tag
Genomic range
Cross-references (format = <db name>:[<id source>:]<id>)
MGE ACLAME ID
MGE Name
Sequences (included by default if FASTA format selected, not included by default if Excel format selected)
Format options
Export in FASTA format
Gzipped data
Simple text
MS Excel file (valid only if FASTA format not selected)
Download ECMs
Select the degree of conservation:
Highest degree of conservation, low coverage (sig 10)
Medium degree of conservation, medium coverage (sig 5)
Lowest degree of conservation, broad coverage (sig 0)
ACLAME functional annotation(s)
Sub-fields (format = <Fct id>|<Fct name>|<Fct description>):
     Function name
     Function description
Format options
Gzipped data
Simple text
MS Excel file
Generated on 9 July 2017Copyright (C) 2003-2017 The ACLAME team.
Terms of use		The ACLAME team